apollo.analysis
Class PrimerBlastHtmlParser

java.lang.Object
  apollo.analysis.PrimerBlastHtmlParser

public class PrimerBlastHtmlParser
extends java.lang.Object

Nested Class Summary

class

PrimerBlastHtmlParser.PrimerBlastHtmlParserException

Constructor Summary

PrimerBlastHtmlParser()

Method Summary

java.lang.String	parse(java.io.InputStream is, StrandedFeatureSetI results)
java.lang.String	parse(java.io.InputStream is, StrandedFeatureSetI results, FeatureList fl)
java.lang.String	parse(java.io.InputStream is, StrandedFeatureSetI results, int offset)
java.lang.String	parse(java.io.InputStream is, StrandedFeatureSetI results, int offset, FeatureList fl)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PrimerBlastHtmlParser

public PrimerBlastHtmlParser()
                      throws java.io.IOException

Throws:

java.io.IOException

Method Detail

parse

public java.lang.String parse(java.io.InputStream is,
                              StrandedFeatureSetI results)
                       throws java.io.IOException,
                              PrimerBlastHtmlParser.PrimerBlastHtmlParserException

Throws:

java.io.IOException

PrimerBlastHtmlParser.PrimerBlastHtmlParserException

parse

public java.lang.String parse(java.io.InputStream is,
                              StrandedFeatureSetI results,
                              FeatureList fl)
                       throws java.io.IOException,
                              PrimerBlastHtmlParser.PrimerBlastHtmlParserException

Throws:

java.io.IOException

PrimerBlastHtmlParser.PrimerBlastHtmlParserException

parse

public java.lang.String parse(java.io.InputStream is,
                              StrandedFeatureSetI results,
                              int offset)
                       throws java.io.IOException,
                              PrimerBlastHtmlParser.PrimerBlastHtmlParserException

Throws:

java.io.IOException

PrimerBlastHtmlParser.PrimerBlastHtmlParserException

parse

public java.lang.String parse(java.io.InputStream is,
                              StrandedFeatureSetI results,
                              int offset,
                              FeatureList fl)
                       throws java.io.IOException,
                              PrimerBlastHtmlParser.PrimerBlastHtmlParserException

Throws:

java.io.IOException

PrimerBlastHtmlParser.PrimerBlastHtmlParserException