apollo.analysis
Class SeqAnalysisNCBI

java.lang.Object
  org.bdgp.io.AbstractDataAdapter
      apollo.analysis.SeqAnalysisBase
          apollo.analysis.SeqAnalysisRemote
              apollo.analysis.SeqAnalysisNCBI

All Implemented Interfaces:

AnalysisDataAdapterI, SeqAnalysisI, org.bdgp.io.DataAdapter, org.bdgp.io.VisualDataAdapter

public class SeqAnalysisNCBI
extends SeqAnalysisRemote

Field Summary

Fields inherited from class apollo.analysis.SeqAnalysisBase

curationSet, rawResults, sequence

Fields inherited from class org.bdgp.io.AbstractDataAdapter

listeners

Fields inherited from interface apollo.analysis.AnalysisDataAdapterI

OP_ANALYZE_DATA

Constructor Summary

SeqAnalysisNCBI()

SeqAnalysisNCBI(java.util.Hashtable inproperties)

Method Summary

java.lang.String	getName() Returns the name of this data adapter
java.lang.String	getType() Returns the type of data handled by this data adapter
org.bdgp.io.DataAdapterUI	getUI(org.bdgp.io.IOOperation op) Returns a user interface for the requested IOOperation.
void	initSeqAnalysisNCBI()
boolean	launch() Once you have configured the SeqAnalysis properties, call this method to run the analysis.

Methods inherited from class apollo.analysis.SeqAnalysisRemote

initSeqAnalysisRemote

Methods inherited from class apollo.analysis.SeqAnalysisBase

addProperty, getAllowedProperties, getAllowedValues, getAllRawResults, getCurationSet, getDesc, getFeatureSet, getInputSequence, getInputSequenceCount, getInputSequences, getProgramName, getProgramParams, getProperties, getProperty, getPropertyDescription, getPropertyType, getRawResultHashtable, getRawResultVector, getSupportedOperations, hasResults, init, initSeqAnalysis, isAsynchronous, isFinished, isStarted, setAllowedProperties, setAllowedValues, setAllowedValues, setDesc, setInputSequence, setInputSequence, setName, setPropertyDescription, setPropertyType, setRawResultHashtable

Methods inherited from class org.bdgp.io.AbstractDataAdapter

addProgressListener, fireProgressEvent, removeProgressListener, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.bdgp.io.VisualDataAdapter

addProgressListener, fireProgressEvent, removeProgressListener

Constructor Detail

SeqAnalysisNCBI

public SeqAnalysisNCBI()

SeqAnalysisNCBI

public SeqAnalysisNCBI(java.util.Hashtable inproperties)

Method Detail

initSeqAnalysisNCBI

public void initSeqAnalysisNCBI()

getUI

public org.bdgp.io.DataAdapterUI getUI(org.bdgp.io.IOOperation op)

Description copied from interface: org.bdgp.io.VisualDataAdapter

Returns a user interface for the requested IOOperation. Most VisualDataAdapters will return a different user interface for each supported IOOperation.

Specified by:

getUI in interface org.bdgp.io.VisualDataAdapter

Overrides:

getUI in class SeqAnalysisRemote

launch

public boolean launch()

Description copied from interface: SeqAnalysisI

Once you have configured the SeqAnalysis properties, call this method to run the analysis. The

Specified by:

launch in interface SeqAnalysisI

Overrides:

launch in class SeqAnalysisRemote

getName

public java.lang.String getName()

Description copied from interface: org.bdgp.io.DataAdapter

Returns the name of this data adapter

Specified by:

getName in interface SeqAnalysisI

Specified by:

getName in interface org.bdgp.io.DataAdapter

Overrides:

getName in class SeqAnalysisRemote

Returns:

the analysis name

getType

public java.lang.String getType()

Description copied from interface: org.bdgp.io.DataAdapter

Returns the type of data handled by this data adapter

Specified by:

getType in interface org.bdgp.io.DataAdapter

Overrides:

getType in class SeqAnalysisRemote