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Class Summary |
| ChadoProgram |
A set of chado.analysis rows that have the same value in their
'program' column. |
| FlybaseChadoInstance |
we need an AbstractChadoInstance super class for generic stuff, like
gene prediction programs. |
| FlybaseWrite |
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| JdbcChadoAdapter |
Abstract superclass that encapsulates vendor-independent routines
for interacting with Chado-compliant relational databases. |
| JdbcChadoWriter |
This class handles writing back to a Chado instance. |
| JDBCTransactionWriter |
This class is used to write/commit a List of ChadoTransactions
into a chado database using JDBC. |
| ParameciumDBChadoInstance |
Implementation of AbstractChadoInstance for ParameciumDB. |
| PostgresChadoAdapter |
A subclass of JdbcChadoAdapter specific to Postgres installations of Chado. |
| PureJDBCTransactionWriter |
An alternative to JDBCTransactionWriter that:
Does not require any triggers to be defined in the database
Keeps all of the SQL and database access code localized to JdbcChadoAdapter and its subclasses
Supports two update modes: in-place update and copy-on-write
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| RiceChadoInstance |
A ChadoInstance |
| SchemaVersion |
Each instance of this class represents a specific Chado schema version. |
| SybaseChadoAdapter |
A subclass of JdbcChadoAdapter specific to Sybase installations of Chado. |
| TableColumn |
Represents a single column in a relational database table. |
| TigrChadoInstance |
Implementation of AbstractChadoInstance for TIGR's chado databases. |
| TigrSybilChadoInstance |
Implementation of AbstractChadoInstance for TIGR's "Sybil" comparative chado databases. |