apollo.dataadapter.flygamexml
Class FlyGAMEAdapter

java.lang.Object
  org.bdgp.io.AbstractDataAdapter
      apollo.dataadapter.AbstractApolloAdapter
          apollo.dataadapter.gamexml.GAMEAdapter
              apollo.dataadapter.flygamexml.FlyGAMEAdapter

All Implemented Interfaces:

ApolloDataAdapterI, org.bdgp.io.DataAdapter, org.bdgp.io.VisualDataAdapter

public class FlyGAMEAdapter
extends GAMEAdapter

Reader for Drosophila GAME XML files. Inherits from GAMEAdapter.

Field Summary

protected static org.apache.log4j.Logger

logger

Fields inherited from class apollo.dataadapter.gamexml.GAMEAdapter

NO_GUI

Fields inherited from class apollo.dataadapter.AbstractApolloAdapter

curation_set, style

Fields inherited from class org.bdgp.io.AbstractDataAdapter

listeners

Fields inherited from interface apollo.dataadapter.ApolloDataAdapterI

OP_APPEND_DATA, OP_READ_DATA, OP_READ_RAW_ANALYSIS, OP_READ_SEQUENCE, OP_WRITE_DATA

Constructor Summary

FlyGAMEAdapter()

FlyGAMEAdapter(DataInputType inputType, java.lang.String input)

FlyGAMEAdapter(DataInputType inputType, java.lang.String input, boolean noGUI)

Method Summary

org.bdgp.io.DataAdapterUI	getUI(org.bdgp.io.IOOperation op) Returns a user interface for the requested IOOperation.
void	init() From org.bdgp.io.DataAdapter interface.
static void	main(java.lang.String[] args) Tests all the input types - can enter filename as arg

Methods inherited from class apollo.dataadapter.gamexml.GAMEAdapter

addToCurationSet, commitChanges, commitChanges, fillInDatabase, fillInPadding, getCurationSet, getDatabase, getDataInput, getStateInformation, getSupportedOperations, getType, hasLinkData, makeUrlFromString, setName, setOriginalFilename, setPadLeft, setPadRight, setRegion, setSeqDescription, setStateInformation

Methods inherited from class apollo.dataadapter.AbstractApolloAdapter

cacheUI, canWriteData, clearOldData, clearStateInformation, commitChanges, commitChanges, commitChanges, commitChanges, getAdapters, getCachedUI, getChildAdapter, getChildAdapter, getCurationState, getDefaultStyle, getFilename, getInput, getInputType, getName, getNameAdapter, getNumberOfChildAdapters, getRawAnalysisResults, getSequence, getSequence, getSequence, getSequences, getSequences, getSpecies, getStyle, isComposite, loadNewSpeciesFromLink, operationIsSupported, rollbackAnnotations, rollbackAnnotations, setCuration, setCurationNumber, setCurationState, setDatabase, setDataInput, setDataLoadListener, setInput, setInputType, setLocation, setRegion, setSpecies, setStyle

Methods inherited from class org.bdgp.io.AbstractDataAdapter

addProgressListener, fireProgressEvent, removeProgressListener, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.bdgp.io.VisualDataAdapter

addProgressListener, fireProgressEvent, removeProgressListener

Field Detail

logger

protected static final org.apache.log4j.Logger logger

Constructor Detail

FlyGAMEAdapter

public FlyGAMEAdapter()

FlyGAMEAdapter

public FlyGAMEAdapter(DataInputType inputType,
                      java.lang.String input)

FlyGAMEAdapter

public FlyGAMEAdapter(DataInputType inputType,
                      java.lang.String input,
                      boolean noGUI)

Method Detail

init

public void init()

Description copied from class: AbstractApolloAdapter

From org.bdgp.io.DataAdapter interface. no-op default implementation. A data adapter should override this if it needs to do some initialization.

Specified by:

init in interface org.bdgp.io.DataAdapter

Overrides:

init in class GAMEAdapter

getUI

public org.bdgp.io.DataAdapterUI getUI(org.bdgp.io.IOOperation op)

Description copied from interface: org.bdgp.io.VisualDataAdapter

Returns a user interface for the requested IOOperation. Most VisualDataAdapters will return a different user interface for each supported IOOperation.

Specified by:

getUI in interface org.bdgp.io.VisualDataAdapter

Overrides:

getUI in class GAMEAdapter

main

public static void main(java.lang.String[] args)
                 throws ApolloAdapterException

Tests all the input types - can enter filename as arg

Throws:

ApolloAdapterException