apollo.dataadapter.graph
Class GraphAdapter

java.lang.Object
  org.bdgp.io.AbstractDataAdapter
      apollo.dataadapter.AbstractApolloAdapter
          apollo.dataadapter.graph.GraphAdapter

All Implemented Interfaces:

ApolloDataAdapterI, org.bdgp.io.DataAdapter, org.bdgp.io.VisualDataAdapter

public class GraphAdapter
extends AbstractApolloAdapter

This is the adapter class for handling graph data

Author:

elee

Field Summary

protected static org.apache.log4j.Logger

logger

Fields inherited from class apollo.dataadapter.AbstractApolloAdapter

curation_set, region, style

Fields inherited from class org.bdgp.io.AbstractDataAdapter

listeners

Fields inherited from interface apollo.dataadapter.ApolloDataAdapterI

OP_APPEND_DATA, OP_READ_DATA, OP_READ_RAW_ANALYSIS, OP_READ_SEQUENCE, OP_WRITE_DATA

Constructor Summary

GraphAdapter()
Constructor

Method Summary

java.lang.Boolean	addToCurationSet(java.awt.Color color) Add graph data
java.lang.String	getGraphFilename() Get the filename for the graph data
org.bdgp.io.IOOperation[]	getSupportedOperations() Get supported operations (append)
org.bdgp.io.DataAdapterUI	getUI(org.bdgp.io.IOOperation op) Get the UI for the data adapter
void	setGraphFilename(java.lang.String graphFilename) Set the filename for the graph data

Methods inherited from class apollo.dataadapter.AbstractApolloAdapter

addToCurationSet, cacheUI, canWriteData, clearOldData, clearStateInformation, commitChanges, commitChanges, commitChanges, commitChanges, commitChanges, commitChanges, getAdapters, getCachedUI, getChildAdapter, getChildAdapter, getCurationSet, getCurationState, getDatabase, getDataInput, getDefaultStyle, getFilename, getInput, getInputType, getName, getNameAdapter, getNumberOfChildAdapters, getRawAnalysisResults, getSequence, getSequence, getSequence, getSequences, getSequences, getSpecies, getStateInformation, getStyle, getType, hasLinkData, init, isComposite, loadNewSpeciesFromLink, operationIsSupported, rollbackAnnotations, rollbackAnnotations, setCuration, setCurationNumber, setCurationState, setDatabase, setDataInput, setDataLoadListener, setInput, setInputType, setLocation, setName, setPadLeft, setPadRight, setRegion, setSpecies, setStateInformation, setStyle

Methods inherited from class org.bdgp.io.AbstractDataAdapter

addProgressListener, fireProgressEvent, removeProgressListener, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.bdgp.io.VisualDataAdapter

addProgressListener, fireProgressEvent, removeProgressListener

Field Detail

logger

protected static final org.apache.log4j.Logger logger

Constructor Detail

GraphAdapter

public GraphAdapter()

Constructor

Method Detail

getSupportedOperations

public org.bdgp.io.IOOperation[] getSupportedOperations()

Get supported operations (append)

Returns:

IOOperation[] - supported operations

getUI

public org.bdgp.io.DataAdapterUI getUI(org.bdgp.io.IOOperation op)

Get the UI for the data adapter

Parameters:

op - - the IOOperation requested

Returns:

the UI for the data adapter

addToCurationSet

public java.lang.Boolean addToCurationSet(java.awt.Color color)
                                   throws ApolloAdapterException

Add graph data

Returns:

true if successful

Throws:

ApolloAdapterException - if there is a problem parsing the data

getGraphFilename

public java.lang.String getGraphFilename()

Get the filename for the graph data

Returns:

the filename for the graph data

setGraphFilename

public void setGraphFilename(java.lang.String graphFilename)

Set the filename for the graph data

Parameters:

graphFilename - - the filename for the graph data