apollo.dataadapter.otter.parser
Class OtterContentHandler

java.lang.Object
  org.xml.sax.helpers.DefaultHandler
      apollo.dataadapter.otter.parser.OtterContentHandler

All Implemented Interfaces:

org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler

public class OtterContentHandler
extends org.xml.sax.helpers.DefaultHandler

I am the ContentHandler used when SyntenyAdaptor parses the result of a call for annotations on the synteny regions in question.

Author:

Vivek Iyer

Constructor Summary

OtterContentHandler()

Method Summary

void	addReturnedObject(java.lang.Object theObject)
void	characters(char[] text, int start, int length)
void	closeMode()
void	endElement(java.lang.String namespaceURI, java.lang.String localName, java.lang.String qualifiedName)
CurationSet	getCurationSet()
java.lang.Object	getCurrentObject()
TagHandler	getMode()
java.util.Stack	getModeStack()
java.util.Stack	getObjectStack()
java.util.List	getReturnedObjects()
java.lang.Object	getStackObject()
java.util.Map	getTagMap()
static void	main(java.lang.String[] args)
java.lang.Object	popStackObject()
void	pushStackObject(java.lang.Object theObject)
void	setCurationSet(CurationSet set)
void	setCurrentObject(java.lang.Object theObject)
void	setMode(TagHandler theMode)
void	startElement(java.lang.String namespaceURI, java.lang.String localName, java.lang.String qualifiedName, org.xml.sax.Attributes attributes)

Methods inherited from class org.xml.sax.helpers.DefaultHandler

endDocument, endPrefixMapping, error, fatalError, ignorableWhitespace, notationDecl, processingInstruction, resolveEntity, setDocumentLocator, skippedEntity, startDocument, startPrefixMapping, unparsedEntityDecl, warning

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

OtterContentHandler

public OtterContentHandler()

Method Detail

getTagMap

public java.util.Map getTagMap()

getCurrentObject

public java.lang.Object getCurrentObject()

setCurrentObject

public void setCurrentObject(java.lang.Object theObject)

addReturnedObject

public void addReturnedObject(java.lang.Object theObject)

getReturnedObjects

public java.util.List getReturnedObjects()

getObjectStack

public java.util.Stack getObjectStack()

pushStackObject

public void pushStackObject(java.lang.Object theObject)

getStackObject

public java.lang.Object getStackObject()

popStackObject

public java.lang.Object popStackObject()

getModeStack

public java.util.Stack getModeStack()

setMode

public void setMode(TagHandler theMode)

getMode

public TagHandler getMode()

closeMode

public void closeMode()

startElement

public void startElement(java.lang.String namespaceURI,
                         java.lang.String localName,
                         java.lang.String qualifiedName,
                         org.xml.sax.Attributes attributes)
                  throws org.xml.sax.SAXException

Specified by:

startElement in interface org.xml.sax.ContentHandler

Overrides:

startElement in class org.xml.sax.helpers.DefaultHandler

Throws:

org.xml.sax.SAXException

endElement

public void endElement(java.lang.String namespaceURI,
                       java.lang.String localName,
                       java.lang.String qualifiedName)
                throws org.xml.sax.SAXException

Specified by:

endElement in interface org.xml.sax.ContentHandler

Overrides:

endElement in class org.xml.sax.helpers.DefaultHandler

Throws:

org.xml.sax.SAXException

characters

public void characters(char[] text,
                       int start,
                       int length)
                throws org.xml.sax.SAXException

Specified by:

characters in interface org.xml.sax.ContentHandler

Overrides:

characters in class org.xml.sax.helpers.DefaultHandler

Throws:

org.xml.sax.SAXException

main

public static void main(java.lang.String[] args)

getCurationSet

public CurationSet getCurationSet()

setCurationSet

public void setCurationSet(CurationSet set)