apollo.dataadapter.otter.parser
Class TranscriptTagHandler

java.lang.Object
  apollo.dataadapter.otter.parser.TagHandler
      apollo.dataadapter.otter.parser.TranscriptTagHandler

public class TranscriptTagHandler
extends TagHandler

I will create a new Gene when my tag is found. When I am closed, I will add myself to the current GenericAnnotationSet.

Field Summary

Fields inherited from class apollo.dataadapter.otter.parser.TagHandler

ACCESSION, ASSEMBLY_END, ASSEMBLY_START, ASSEMBLY_TYPE, AUTHOR, AUTHOR_EMAIL, CDS_END_NOT_FOUND, CDS_START_NOT_FOUND, CHROMOSOME, END, EVIDENCE, EXON, FRAGMENT_OFFSET, FRAGMENT_ORI, FRAME, ID, INDENT, KEYWORD, KNOWN, LEFT, LOCUS, LOCUS_TYPE, MRNA_END_NOT_FOUND, MRNA_START_NOT_FOUND, NAME, OTTER, REMARK, RETURN, RIGHT, SEQUENCE_FRAGMENT, SEQUENCE_SET, SLASH, STABLE_ID, START, STRAND, SYNONYM, TRANSCRIPT, TRANSCRIPT_CLASS, TRANSLATION_END, TRANSLATION_STABLE_ID, TRANSLATION_START, TYPE, VERSION

Constructor Summary

TranscriptTagHandler()

Method Summary

java.lang.String	getFullName()
java.lang.String	getLeafName()
void	handleEndElement(OtterContentHandler theContentHandler, java.lang.String namespaceURI, java.lang.String localName, java.lang.String qualifiedName)
void	handleStartElement(OtterContentHandler theContentHandler, java.lang.String namespaceURI, java.lang.String localName, java.lang.String qualifiedName, org.xml.sax.Attributes attributes)

Methods inherited from class apollo.dataadapter.otter.parser.TagHandler

appendCharacterBuffer, getCharacterBuffer, getCharacters, handleCharacters, setCharacterBuffer

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TranscriptTagHandler

public TranscriptTagHandler()

Method Detail

handleStartElement

public void handleStartElement(OtterContentHandler theContentHandler,
                               java.lang.String namespaceURI,
                               java.lang.String localName,
                               java.lang.String qualifiedName,
                               org.xml.sax.Attributes attributes)

Overrides:

handleStartElement in class TagHandler

handleEndElement

public void handleEndElement(OtterContentHandler theContentHandler,
                             java.lang.String namespaceURI,
                             java.lang.String localName,
                             java.lang.String qualifiedName)

Overrides:

handleEndElement in class TagHandler

getFullName

public java.lang.String getFullName()

Specified by:

getFullName in class TagHandler

getLeafName

public java.lang.String getLeafName()

Specified by:

getLeafName in class TagHandler