|
|||||||||
| PREV PACKAGE NEXT PACKAGE | FRAMES NO FRAMES | ||||||||
| Interface Summary | |
|---|---|
| ApolloDataAdapterGUI | |
| ApolloDataAdapterI | DataAdapterI interface Used to load annotated and non-annotated data from whatever datasource Could this implement org.bdgp.io.VisualDataAdapter or are there apollo adapters with no UI? |
| DataListener | Interface to get notification when an adapter is about to create new data Should this be merged with DataLoadListener? YES! and go through controller perhaps Controller should go in a different package than gui? Should there be one method with a DataEvent that distinguishes beginning and ending load? 7.26.04 This has been merged with DataLoadListener. |
| DataLoadListener | |
| KaryotypeAdapterI | |
| SyntenyAdapterI | |
| TransactionTransformer | This class is used to translate Apollo Transaction objects (in package apollo.editor) that are in TransactionManager, to another forms of Transaction object (e.g. |
| Class Summary | |
|---|---|
| AbstractApolloAdapter | All the dataadapters now subclass AbstractApolloAdapter, which new data adapters should do as well. |
| BaseGFFAdapter | I'm a variant of a GFFAdapter that does NO translation of the features I read into sets of features (ie no post-processing of the data). |
| CGI | |
| ChromosomeAdapter | |
| CurationState | |
| DataInput | This lumps together DataInputType and getInput String in ApolloDataAdapterI. |
| DataInputType | A value class for the different types of Data input |
| DataLoadEvent | DataLoadEvent are sent out on new data being loaded. |
| DummySequenceAdapter | |
| EfetchSequenceAdapter | Is this class still being used? - delete? |
| EnsCGIAdapter | |
| EnsCGIAdapterGUI | |
| FeatureSetBuilder | |
| FileTabPanel | A guiTabPanel (panel in JTabbed pane of ApolloAdapterUI) that has a browse button that brings up a file browser |
| GbrowseAdapter | |
| GbrowseAdapterGUI | |
| GFFAdapter | |
| GFFAdapterGUI | |
| GFFSyntenyAdapter | |
| GuiTabPanel | This is only used by GAMEAdapterGUI. |
| KaryotypeAdapter | A simple implementation of KaryotypeAdapterI. |
| KaryotypeUtil | |
| Region | Has chromosome string and start and end ints. |
| SerialAdapterGUI | |
| SerialDiskAdapter | |
| StateInformation | Central class for state-information keys |
| SyntenyAdapter | A simple bucket-of-info implementation of SyntenyAdapterI, to be fed forward to FullEnsJDBCSyntenyPanel |
| SyntenyGFFAdapter | |
| TransactionOutputAdapter | A class used to handle Transaction objects output. |
| URLDiagnosticTool | I allow the user to check (and tweak) the contents of a URL-fetch before allowing the fetched data to be returned to the application. |
| Exception Summary | |
|---|---|
| ApolloAdapterException | |
| DataInputType.UnknownTypeException | |
| NonFatalDataAdapterException | I can be thrown by code being driven by an Apollo dataadapter - I will be caught by the dataadapter's gui, and a dialog will be presented to the user, who will then be allowed to reinput data and try a read again. |
| NotImplementedException | |
| TransactionTransformException | |
|
|||||||||
| PREV PACKAGE NEXT PACKAGE | FRAMES NO FRAMES | ||||||||