apollo.datamodel
Class SyntenyRegion

java.lang.Object
  apollo.datamodel.SyntenyRegion

public class SyntenyRegion
extends java.lang.Object

Constructor Summary

SyntenyRegion(Chromosome chr1, int start1, int end1, Chromosome chr2, int start2, int end2, int orientation)

Method Summary

Chromosome	getChromosome1()
Chromosome	getChromosome2()
int	getEnd1()
int	getEnd2()
int	getOrientation()
int	getStart1()
int	getStart2()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SyntenyRegion

public SyntenyRegion(Chromosome chr1,
                     int start1,
                     int end1,
                     Chromosome chr2,
                     int start2,
                     int end2,
                     int orientation)

Method Detail

getChromosome1

public Chromosome getChromosome1()

getStart1

public int getStart1()

getEnd1

public int getEnd1()

getChromosome2

public Chromosome getChromosome2()

getStart2

public int getStart2()

getEnd2

public int getEnd2()

getOrientation

public int getOrientation()