apollo.gui
Class SgrScoreCalculator

java.lang.Object
  apollo.gui.ScoreCalculator
      apollo.gui.WindowScoreCalculator
          apollo.gui.StoredScoreCalculator
              apollo.gui.SgrScoreCalculator

public class SgrScoreCalculator
extends StoredScoreCalculator

Gets the score for a given position from a sgr file

Author:

elee

Field Summary

protected static org.apache.log4j.Logger

logger

Fields inherited from class apollo.gui.StoredScoreCalculator

maxScore, minScore, scoreMap

Fields inherited from class apollo.gui.ScoreCalculator

factor

Constructor Summary

SgrScoreCalculator(java.lang.String data, int winSize, CurationSet curation)
Builds a SgrScoreCalculator object

Method Summary

Methods inherited from class apollo.gui.StoredScoreCalculator

getMaxScore, getMinScore, getScoreForPosition, getScoresForPositions, getXRange, getYRange

Methods inherited from class apollo.gui.WindowScoreCalculator

getModel, getWindowExtents, getWinSize, hasModel, setWinSize

Methods inherited from class apollo.gui.ScoreCalculator

getFactor, setXOrientation

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

protected static final org.apache.log4j.Logger logger

Constructor Detail

SgrScoreCalculator

public SgrScoreCalculator(java.lang.String data,
                          int winSize,
                          CurationSet curation)
                   throws java.io.IOException

Builds a SgrScoreCalculator object

Parameters:

data - - name of file containing sgr data

winSize - - size of display window

Throws:

java.io.IOException - - if the file cannot be accessed