apollo.gui.detailviewers.exonviewer
Class BaseFineEditor

java.lang.Object
  java.awt.Component
      java.awt.Container
          java.awt.Window
              java.awt.Frame
                  javax.swing.JFrame
                      apollo.gui.detailviewers.exonviewer.BaseFineEditor

All Implemented Interfaces:

AnnotationChangeListener, ControlledObjectI, FeatureSelectionListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants

public class BaseFineEditor
extends javax.swing.JFrame
implements FeatureSelectionListener, ControlledObjectI, AnnotationChangeListener

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JFrame

javax.swing.JFrame.AccessibleJFrame

Nested classes/interfaces inherited from class java.awt.Frame

java.awt.Frame.AccessibleAWTFrame

Nested classes/interfaces inherited from class java.awt.Window

java.awt.Window.AccessibleAWTWindow

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

protected javax.swing.JButton	clearFindsButton
protected javax.swing.JButton	downstream_button
protected BaseEditorPanel	editorPanel
protected javax.swing.JButton	findButton
protected javax.swing.JButton	goToButton
protected javax.swing.JLabel	lengthLabel
protected Transcript	neighbor_down
protected Transcript	neighbor_up
protected javax.swing.JCheckBox	showIntronBox
protected javax.swing.JButton	upstream_button

Fields inherited from class javax.swing.JFrame

accessibleContext, EXIT_ON_CLOSE, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Frame

CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, HIDE_ON_CLOSE

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Method Summary

void	attachListeners()
void	dispose()
static void	disposeAllEditors() Dispose all editors currently in existence.
Controller	getController() Gets the Controller for the object
java.lang.Object	getControllerWindow() Shouldnt this return Window - would we ever want a non-window?
java.awt.Color	getIndicatorColor()
SelectionManager	getSelectionManager()
boolean	handleAnnotationChangeEvent(AnnotationChangeEvent evt)
boolean	handleFeatureSelectionEvent(FeatureSelectionEvent evt) Handle the selection event (feature was selected in another window--select it here) This is also where selections from BaseFineEditor come in which are really internal selections.
boolean	needsAutoRemoval() If getControllerWindow is non null, and needsAutoRemoval is true then Controller will automatically remove the ControlledObjectI as a listener when its ControllerWindow is closing.
void	setController(Controller controller) ControlledObjectI interface - but controller now comes from curationState
void	setSelectionManager(SelectionManager sm)
static void	showBaseEditor(AnnotatedFeatureI editMe, GuiCurationState curationState, SeqFeatureI geneHolder)

Methods inherited from class javax.swing.JFrame

addImpl, createRootPane, frameInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getJMenuBar, getLayeredPane, getRootPane, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setIconImage, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, update

Methods inherited from class java.awt.Frame

addNotify, finalize, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setResizable, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getGraphicsConfiguration, getInputContext, getListeners, getLocale, getMostRecentFocusOwner, getOwnedWindows, getOwner, getToolkit, getWarningString, getWindowFocusListeners, getWindowListeners, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isShowing, pack, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, setAlwaysOnTop, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setLocationByPlatform, setLocationRelativeTo, show, toBack, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paint, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphics, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, reshape, resize, resize, setBackground, setBounds, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setMaximumSize, setMinimumSize, setName, setPreferredSize, setSize, setSize, setVisible, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer

getFont, postEvent

Field Detail

editorPanel

protected BaseEditorPanel editorPanel

lengthLabel

protected javax.swing.JLabel lengthLabel

findButton

protected javax.swing.JButton findButton

clearFindsButton

protected javax.swing.JButton clearFindsButton

goToButton

protected javax.swing.JButton goToButton

showIntronBox

protected javax.swing.JCheckBox showIntronBox

upstream_button

protected javax.swing.JButton upstream_button

downstream_button

protected javax.swing.JButton downstream_button

neighbor_up

protected Transcript neighbor_up

neighbor_down

protected Transcript neighbor_down

Method Detail

showBaseEditor

public static void showBaseEditor(AnnotatedFeatureI editMe,
                                  GuiCurationState curationState,
                                  SeqFeatureI geneHolder)

setController

public void setController(Controller controller)

ControlledObjectI interface - but controller now comes from curationState

Specified by:

setController in interface ControlledObjectI

getController

public Controller getController()

Description copied from interface: ControlledObjectI

Gets the Controller for the object

Specified by:

getController in interface ControlledObjectI

getControllerWindow

public java.lang.Object getControllerWindow()

Description copied from interface: ControlledObjectI

Shouldnt this return Window - would we ever want a non-window?

Specified by:

getControllerWindow in interface ControlledObjectI

needsAutoRemoval

public boolean needsAutoRemoval()

Description copied from interface: ControlledObjectI

If getControllerWindow is non null, and needsAutoRemoval is true then Controller will automatically remove the ControlledObjectI as a listener when its ControllerWindow is closing. If getControllerWindow is null needsAutoRemoval is meaningless. Rename this removeAsListenerOnWindowClose?

Specified by:

needsAutoRemoval in interface ControlledObjectI

setSelectionManager

public void setSelectionManager(SelectionManager sm)

getSelectionManager

public SelectionManager getSelectionManager()

handleAnnotationChangeEvent

public boolean handleAnnotationChangeEvent(AnnotationChangeEvent evt)

Specified by:

handleAnnotationChangeEvent in interface AnnotationChangeListener

handleFeatureSelectionEvent

public boolean handleFeatureSelectionEvent(FeatureSelectionEvent evt)

Handle the selection event (feature was selected in another window--select it here) This is also where selections from BaseFineEditor come in which are really internal selections. Only handle external selection if followSelection is checked

Specified by:

handleFeatureSelectionEvent in interface FeatureSelectionListener

getIndicatorColor

public java.awt.Color getIndicatorColor()

attachListeners

public void attachListeners()

disposeAllEditors

public static void disposeAllEditors()

Dispose all editors currently in existence. Keeps track of all instances for this purpose

dispose

public void dispose()

Overrides:

dispose in class java.awt.Window