apollo.gui.detailviewers.sequencealigner
Class CompactFeaturePlaceFinder

java.lang.Object
  apollo.gui.detailviewers.sequencealigner.FeaturePlaceFinder
      apollo.gui.detailviewers.sequencealigner.CompactFeaturePlaceFinder

public class CompactFeaturePlaceFinder
extends FeaturePlaceFinder

This class encapsulates a 'compact' place finding algorithm. It will find the first tier that has room to place the given feature without overlapping any other features.

Nested Class Summary

Nested classes/interfaces inherited from class apollo.gui.detailviewers.sequencealigner.FeaturePlaceFinder

FeaturePlaceFinder.Type

Constructor Summary

CompactFeaturePlaceFinder()

Method Summary

TierI

findTierForFeature(java.util.List<TierI> tiers, SeqFeatureI feature)

Methods inherited from class apollo.gui.detailviewers.sequencealigner.FeaturePlaceFinder

createFinder

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CompactFeaturePlaceFinder

public CompactFeaturePlaceFinder()

Method Detail

findTierForFeature

public TierI findTierForFeature(java.util.List<TierI> tiers,
                                SeqFeatureI feature)

Specified by:

findTierForFeature in class FeaturePlaceFinder