apollo.gui.detailviewers.sequencealigner
Class SemiCompactFeaturePlaceFinder

java.lang.Object
  apollo.gui.detailviewers.sequencealigner.FeaturePlaceFinder
      apollo.gui.detailviewers.sequencealigner.SemiCompactFeaturePlaceFinder

public class SemiCompactFeaturePlaceFinder
extends FeaturePlaceFinder

This class encapsulates a 'semi compact' place finding algorithm. It will find the tier that has room to place the given feature above all other previously previously placed features that are within its range

Nested Class Summary

Nested classes/interfaces inherited from class apollo.gui.detailviewers.sequencealigner.FeaturePlaceFinder

FeaturePlaceFinder.Type

Constructor Summary

SemiCompactFeaturePlaceFinder()

Method Summary

TierI

findTierForFeature(java.util.List<TierI> tiers, SeqFeatureI feature)

Methods inherited from class apollo.gui.detailviewers.sequencealigner.FeaturePlaceFinder

createFinder

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SemiCompactFeaturePlaceFinder

public SemiCompactFeaturePlaceFinder()

Method Detail

findTierForFeature

public TierI findTierForFeature(java.util.List<TierI> tiers,
                                SeqFeatureI feature)

Specified by:

findTierForFeature in class FeaturePlaceFinder