apollo.gui.detailviewers.sequencealigner
Class Utils

java.lang.Object
  apollo.gui.detailviewers.sequencealigner.Utils

public class Utils
extends java.lang.Object

Constructor Summary

Utils()

Method Summary

static int[]	findSplices(MultiTierPanel panel, int pos, int strand, boolean add_exon, int low_limit, int high_limit) returns the positions of the donor and acceptor splice sites in coordinates relative to the genomic sequence.
static boolean	notTooSmall(int start_pos, int end_pos)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Utils

public Utils()

Method Detail

findSplices

public static int[] findSplices(MultiTierPanel panel,
                                int pos,
                                int strand,
                                boolean add_exon,
                                int low_limit,
                                int high_limit)

returns the positions of the donor and acceptor splice sites in coordinates relative to the genomic sequence. The index of 0 points to the lower coord whether or not it is the donor RAY: From BaseEditorPanel

notTooSmall

public static boolean notTooSmall(int start_pos,
                                  int end_pos)