apollo.gui.detailviewers.sequencealigner.renderers
Class AnnotationRenderer

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              apollo.gui.detailviewers.sequencealigner.renderers.TestBaseRenderer
                  apollo.gui.detailviewers.sequencealigner.renderers.AnnotationRenderer

All Implemented Interfaces:

RegionSelectableI, BaseRendererI, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable

public class AnnotationRenderer
extends TestBaseRenderer
implements RegionSelectableI

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields inherited from class apollo.gui.detailviewers.sequencealigner.renderers.TestBaseRenderer

CENTER_OUTLINE, LEFT_OUTLINE, NO_OUTLINE, RIGHT_OUTLINE

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

AnnotationRenderer(GuiCurationState curationState)

Method Summary

java.awt.Color	getBackgroundBoxColor()
java.awt.Color	getBackgroundLineColor()
java.awt.Component	getBaseComponent(int position, TierI tier, Orientation o) Get component to be rendered, if pos outside of current range getFeatureAtPosition and reset currentRange, if feature is non null and not an instance of FeatureSetI then its an exon, and set isExon flag
static int	getOffset(int position, TierI tier)
int	getRegionEnd()
int	getRegionHigh()
int	getRegionLow()
int	getRegionStart()
java.awt.Color	getTextColor()
void	setRegionEnd(int pos)
void	setRegionStart(int pos)

Methods inherited from class apollo.gui.detailviewers.sequencealigner.renderers.TestBaseRenderer

getBase, getBaseHeight, getBaseWidth, getBrokenEdgeColor, getCharacter, getHatchColor, getOutlineColor, getOutlineType, init, isSelectable, paint, paintNotify, pixelPositionToTierPosition, setCharacter, setTargetPosition, tierPositionToPixelPosition

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getAccessibleContext, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getUIClassID, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, paramString, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update, updateUI

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

AnnotationRenderer

public AnnotationRenderer(GuiCurationState curationState)

Method Detail

getBaseComponent

public java.awt.Component getBaseComponent(int position,
                                           TierI tier,
                                           Orientation o)

Get component to be rendered, if pos outside of current range getFeatureAtPosition and reset currentRange, if feature is non null and not an instance of FeatureSetI then its an exon, and set isExon flag

Specified by:

getBaseComponent in interface BaseRendererI

Overrides:

getBaseComponent in class TestBaseRenderer

getBackgroundBoxColor

public java.awt.Color getBackgroundBoxColor()

Overrides:

getBackgroundBoxColor in class TestBaseRenderer

getBackgroundLineColor

public java.awt.Color getBackgroundLineColor()

Overrides:

getBackgroundLineColor in class TestBaseRenderer

getTextColor

public java.awt.Color getTextColor()

Overrides:

getTextColor in class TestBaseRenderer

getRegionEnd

public int getRegionEnd()

Specified by:

getRegionEnd in interface RegionSelectableI

getRegionStart

public int getRegionStart()

Specified by:

getRegionStart in interface RegionSelectableI

setRegionEnd

public void setRegionEnd(int pos)

Specified by:

setRegionEnd in interface RegionSelectableI

setRegionStart

public void setRegionStart(int pos)

Specified by:

setRegionStart in interface RegionSelectableI

getRegionHigh

public int getRegionHigh()

Specified by:

getRegionHigh in interface RegionSelectableI

getRegionLow

public int getRegionLow()

Specified by:

getRegionLow in interface RegionSelectableI

getOffset

public static int getOffset(int position,
                            TierI tier)

Parameters:

position -

tier -

Returns: