apollo.gui.genomemap
Class FeatureTier

java.lang.Object
  apollo.gui.Tier
      apollo.gui.genomemap.FeatureTier

public class FeatureTier
extends Tier

A Tier to hold features.

Field Summary

protected static org.apache.log4j.Logger

logger

Fields inherited from class apollo.gui.Tier

MINHEIGHT

Constructor Summary

FeatureTier()

Method Summary

void	addFeature(Drawable dsf, Transformer transformer) Calls addFeature on its FeatureSet with the DrawableSeqFeature and the sort flag set to true, this will cause the DSFs to be sorted Since it only allows DrawableSeqFeatures to be added shouldnt the fset be a DrawableFeatureSet instead of just a FeatureSet? Then getFeatureSet could return a DrawableFeatureSet and we wouldnt have to cast it There doesnt seem to be a reason at the moment to let it other features than dsfs - am i right about this?
java.awt.Color	getColour()
Drawable	getDrawableAt(int i)
java.util.Vector	getDrawables()
FeatureProperty	getFeatureProperty()
int	getHigh()
int	getLocation(Drawable dsf)
int	getPixelHigh()
int	getTextEnd()
java.lang.String	getTierLabel()
boolean	isLabeled()
void	removeDrawable(Drawable dsf)
void	setTextEnd(int newEnd)
void	setTierLabel(Drawable dsf)
int	size()
java.lang.String	toString()

Methods inherited from class apollo.gui.Tier

getCharHigh, getCharLow, getDrawCentre, getDrawHigh, getDrawLow, getDrawSpace, getTotalSpace, setCharHeight, setDrawSpace, setup, updateUserCoordBoundaries

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

logger

protected static final org.apache.log4j.Logger logger

Constructor Detail

FeatureTier

public FeatureTier()

Method Detail

addFeature

public void addFeature(Drawable dsf,
                       Transformer transformer)

Calls addFeature on its FeatureSet with the DrawableSeqFeature and the sort flag set to true, this will cause the DSFs to be sorted Since it only allows DrawableSeqFeatures to be added shouldnt the fset be a DrawableFeatureSet instead of just a FeatureSet? Then getFeatureSet could return a DrawableFeatureSet and we wouldnt have to cast it There doesnt seem to be a reason at the moment to let it other features than dsfs - am i right about this?

getLocation

public int getLocation(Drawable dsf)

size

public int size()

removeDrawable

public void removeDrawable(Drawable dsf)

getDrawables

public java.util.Vector getDrawables()

getHigh

public int getHigh()

getPixelHigh

public int getPixelHigh()

getDrawableAt

public Drawable getDrawableAt(int i)

getFeatureProperty

public FeatureProperty getFeatureProperty()

setTierLabel

public void setTierLabel(Drawable dsf)

getTierLabel

public java.lang.String getTierLabel()

Specified by:

getTierLabel in class Tier

getColour

public java.awt.Color getColour()

isLabeled

public boolean isLabeled()

Specified by:

isLabeled in class Tier

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

getTextEnd

public int getTextEnd()

Overrides:

getTextEnd in class Tier

setTextEnd

public void setTextEnd(int newEnd)

Overrides:

setTextEnd in class Tier