apollo.gui.genomemap
Class ManagedView

java.lang.Object
  apollo.gui.genomemap.LinearView
      apollo.gui.genomemap.ManagedView

All Implemented Interfaces:

ManagedViewI, ViewI

Direct Known Subclasses:

DragView, TierView

public abstract class ManagedView
extends LinearView
implements ManagedViewI

An extension of LinearView for drawing analysis results.

Field Summary

protected int	dropSpaceSize
protected int	leadSpaceSize
protected static org.apache.log4j.Logger	logger
protected TierManagerI	manager
protected java.util.Vector	visibleDrawables

Fields inherited from class apollo.gui.genomemap.LinearView

apollo_panel, backgroundColour, debug, foregroundColour, graphics, limitsSet, transformer, transparent, viewBounds, visibilityListeners, visible

Fields inherited from interface apollo.gui.genomemap.ViewI

LEFTSIDE, NONE, RIGHTSIDE

Constructor Summary

ManagedView(javax.swing.JComponent ap, java.lang.String name, boolean visible)

Method Summary

void	clear()
int	getDropSpaceSize()
int	getLeadSpaceSize()
TierManagerI	getTierManager()
java.util.Vector	getVisibleDrawables()
protected int[]	getYRange()
protected void	paintDrawables()
void	paintView() paintView draws a cross in the centre of the View and a small cross in the upper left quadrant
void	setBounds(java.awt.Rectangle bounds) Set the coordinates of the rectangle containing the View.
void	setDropSpaceSize(int size)
void	setLeadSpaceSize(int size)
void	setTierManager(TierManagerI ftm) Set the tier manager for the view
void	setXOrientation(int direction)
void	setYOrientation(int direction) YOrientation gets flipped with revcomping
protected void	updateManagerHeight()

Methods inherited from class apollo.gui.genomemap.LinearView

addViewListener, addVisibilityListener, areLimitsSet, fireViewEvent, getBackgroundColour, getBounds, getCentre, getComponent, getDrawBounds, getForegroundColour, getGraphics, getLimits, getMaximum, getMinimum, getName, getPreferredSize, getSelectionRectangle, getStrand, getTransform, getVisibleRange, init, isInvalid, isTransparent, isVisible, setBackgroundColour, setCentre, setComponent, setDebug, setDrawBounds, setForegroundColour, setGraphics, setInvalidity, setLimits, setLimitsSet, setMaximum, setMinimum, setName, setStrand, setTransform, setTransparent, setVisible, setVisible, setZoomFactor

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface apollo.gui.genomemap.ViewI

addViewListener, areLimitsSet, getBounds, getCentre, getComponent, getLimits, getMaximum, getMinimum, getName, getPreferredSize, getTransform, getVisibleRange, isInvalid, isTransparent, isVisible, setCentre, setComponent, setGraphics, setInvalidity, setLimits, setLimitsSet, setMaximum, setMinimum, setName, setTransparent, setVisible, setZoomFactor

Field Detail

logger

protected static final org.apache.log4j.Logger logger

manager

protected TierManagerI manager

visibleDrawables

protected java.util.Vector visibleDrawables

leadSpaceSize

protected int leadSpaceSize

dropSpaceSize

protected int dropSpaceSize

Constructor Detail

ManagedView

public ManagedView(javax.swing.JComponent ap,
                   java.lang.String name,
                   boolean visible)

Method Detail

setTierManager

public void setTierManager(TierManagerI ftm)

Description copied from interface: ManagedViewI

Set the tier manager for the view

Specified by:

setTierManager in interface ManagedViewI

getTierManager

public TierManagerI getTierManager()

Specified by:

getTierManager in interface ManagedViewI

setBounds

public void setBounds(java.awt.Rectangle bounds)

Description copied from interface: ViewI

Set the coordinates of the rectangle containing the View.

Specified by:

setBounds in interface ViewI

Overrides:

setBounds in class LinearView

Parameters:

bounds - The rectangle describing the new bounds of the View in parent component coordinates.

updateManagerHeight

protected void updateManagerHeight()

getYRange

protected int[] getYRange()

getLeadSpaceSize

public int getLeadSpaceSize()

setLeadSpaceSize

public void setLeadSpaceSize(int size)

getDropSpaceSize

public int getDropSpaceSize()

setDropSpaceSize

public void setDropSpaceSize(int size)

setXOrientation

public void setXOrientation(int direction)

setYOrientation

public void setYOrientation(int direction)

YOrientation gets flipped with revcomping

clear

public void clear()

Specified by:

clear in interface ViewI

Overrides:

clear in class LinearView

getVisibleDrawables

public java.util.Vector getVisibleDrawables()

paintView

public void paintView()

Description copied from class: LinearView

paintView draws a cross in the centre of the View and a small cross in the upper left quadrant

Specified by:

paintView in interface ViewI

Overrides:

paintView in class LinearView

paintDrawables

protected void paintDrawables()