apollo.gui.genomemap
Class ScrollAdjustedView

java.lang.Object
  apollo.gui.genomemap.LinearView
      apollo.gui.genomemap.ScrollAdjustedView

All Implemented Interfaces:

ViewI

Direct Known Subclasses:

GraphView, ScaleView, TranslationView

public abstract class ScrollAdjustedView
extends LinearView

Field Summary

protected int	prefHeight
protected boolean	reverseComplement Whether whole view is being reverse complemented
protected int	scroller

Fields inherited from class apollo.gui.genomemap.LinearView

apollo_panel, backgroundColour, debug, foregroundColour, graphics, limitsSet, logger, transformer, transparent, viewBounds, visibilityListeners, visible

Fields inherited from interface apollo.gui.genomemap.ViewI

LEFTSIDE, NONE, RIGHTSIDE

Constructor Summary

ScrollAdjustedView(javax.swing.JComponent ap, java.lang.String name, boolean visible, int prefHeight)

Method Summary

protected SeqFeatureI	featureContains(SeqFeatureI sf, int base_position)
java.awt.Rectangle	getPreferredSize() Get the preferred size for the view
void	setDrawBounds(java.awt.Rectangle rect)
void	setScrollFlag(int scroller)
java.awt.Rectangle	setScrollSpace(int where)
void	setXOrientation(int direction)

Methods inherited from class apollo.gui.genomemap.LinearView

addViewListener, addVisibilityListener, areLimitsSet, clear, fireViewEvent, getBackgroundColour, getBounds, getCentre, getComponent, getDrawBounds, getForegroundColour, getGraphics, getLimits, getMaximum, getMinimum, getName, getSelectionRectangle, getStrand, getTransform, getVisibleRange, init, isInvalid, isTransparent, isVisible, paintView, setBackgroundColour, setBounds, setCentre, setComponent, setDebug, setForegroundColour, setGraphics, setInvalidity, setLimits, setLimitsSet, setMaximum, setMinimum, setName, setStrand, setTransform, setTransparent, setVisible, setVisible, setZoomFactor

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

scroller

protected int scroller

prefHeight

protected int prefHeight

reverseComplement

protected boolean reverseComplement

Whether whole view is being reverse complemented

Constructor Detail

ScrollAdjustedView

public ScrollAdjustedView(javax.swing.JComponent ap,
                          java.lang.String name,
                          boolean visible,
                          int prefHeight)

Method Detail

setScrollFlag

public void setScrollFlag(int scroller)

setScrollSpace

public java.awt.Rectangle setScrollSpace(int where)

setDrawBounds

public void setDrawBounds(java.awt.Rectangle rect)

Overrides:

setDrawBounds in class LinearView

getPreferredSize

public java.awt.Rectangle getPreferredSize()

Description copied from interface: ViewI

Get the preferred size for the view

Specified by:

getPreferredSize in interface ViewI

Overrides:

getPreferredSize in class LinearView

setXOrientation

public void setXOrientation(int direction)

featureContains

protected SeqFeatureI featureContains(SeqFeatureI sf,
                                      int base_position)